Index
Reproducibility-in-Bioinformatics
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Course overview
About
Working environment
Day 1
Exercise 1 - Refresh command line skills
Exercise 2 - Installing software reproducibly
Exercise 3 - Data organization
Exercise 4 - Version control with Git
Day 2
Exercise 1 - Virtual environments
Exercise 2 - Working with Docker
Exercise 3 - Advanced Docker and Singularity
Exercise 4 - Container pitfalls
Day 3
Exercise 1 - Workflow management systems
Exercise 2 - Creating a self sustained bioinformatic pipeline
Related Topics
Documentation overview