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Reproducibility-in-Bioinformatics

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Course overview

About
Working environment

Day 1

Exercise 1 - Refresh command line skills
Exercise 2 - Installing software reproducibly
Exercise 3 - Data organization
Exercise 4 - Version control with Git

Day 2

Exercise 1 - Virtual environments
Exercise 2 - Working with Docker
Exercise 3 - Advanced Docker and Singularity
Exercise 4 - Container pitfalls

Day 3

Exercise 1 - Workflow management systems
Exercise 2 - Creating a self sustained bioinformatic pipeline

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Documentation overview

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